Mercurial > repos > mingchen0919 > aurora_fastqc_site

diff 01_evaluation_overview.Rmd @ 6:53b851fa90de draft

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2.1.1
author mingchen0919
date Tue, 13 Mar 2018 11:33:13 -0400
parents b9c9d1dacda6
children 3f92c10de274
line wrap: on
line diff
--- a/01_evaluation_overview.Rmd	Tue Mar 13 11:10:28 2018 -0400
+++ b/01_evaluation_overview.Rmd	Tue Mar 13 11:33:13 2018 -0400
@@ -23,6 +23,7 @@
 cp ${X_r} ${X_d}/read_1.fq
 cp ${X_R} ${X_d}/read_2.fq
 
+mkdir -p read_1 read_2
 cat >temp.sh <<EOL
 fastqc \\
   -q \\