Mercurial > repos > mingchen0919 > aurora_fastqc_site

annotate expose-outputs-to-galaxy-history.sh @ 10:5286f3b1c9c2 draft default tip

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planemo upload commit 363ef0a73d874c67326a67f51a78328906951248-dirty
author mingchen0919
date Fri, 30 Nov 2018 22:15:50 -0500
parents 94762f1cb779
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
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1 # change directory to tool outputs directory
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
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2 cd ${REPORT_FILES_PATH}
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
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3
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
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4 # copy outputs from tool outputs directory to corresponding galaxy output path
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
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5 if [ -e rmarkdown_report.html ]; then
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
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6 cp rmarkdown_report.html ${REPORT}
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
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7 fi
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
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8
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
diff changeset
9 if [ -e index.html ]; then
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
diff changeset
10 cp index.html ${REPORT}
94762f1cb779 planemo upload commit 76f9ca75d5b1c0c0fad6c10876d9dfeba7d5ecff-dirty
mingchen0919
parents:
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11 fi