Mercurial > repos > mingchen0919 > aurora_deseq2_site
changeset 6:d961c2f5e172 draft
planemo upload commit 0b6e8a54187fd05c2bd373c8a0d7d23590240404-dirty
author | mingchen0919 |
---|---|
date | Mon, 14 May 2018 14:32:06 -0400 |
parents | 20061de8f3f2 |
children | 90f3027fdb28 |
files | rmarkdown_report.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/rmarkdown_report.xml Mon May 14 11:40:10 2018 -0400 +++ b/rmarkdown_report.xml Mon May 14 14:32:06 2018 -0400 @@ -47,10 +47,10 @@ ]]></command> <inputs> <param type="data" name="count_data" label="Count data" - help="an RData file that stores the count matrix data. The file is generated from the aurora_htseq tool." + help="The first column is sample names; The remaining columns are read counts from each sample." optional="False" format="csv"/> <param type="data" name="column_data" label="Column data" - help="A table file that stores column data for DESeq2 analysis. The first column are the column names from the count data matrix. The remaining columns are experimental treatments." + help="The first column are sample names (column name from the count data); The remaining columns are experimental treatments." optional="False" format="csv"/> <param type="text" name="design_formula" label="Design formula" help="The design formula expresses the variables which will be used in modeling. The formula should be a tilde (~) followed by the variables with plus signs between them, e.g., ~ condition1 + condition2"