Mercurial > repos > mingchen0919 > aurora_deseq2_site
annotate build-and-run-job-scripts.sh @ 6:d961c2f5e172 draft
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author | mingchen0919 |
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date | Mon, 14 May 2018 14:32:06 -0400 |
parents | b69138a05735 |
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1 # run job scripts within the tool outputs directory |
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2 cd ${REPORT_FILES_PATH} |
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3 |
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4 #========== build and run job 1 script ============ |
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5 cat >job-1-script.sh <<EOF |
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6 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT -------------- |
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7 |
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8 |
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9 #------------ END OF SHELL SCRIPT ------------------------------------------ |
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10 EOF |
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11 |
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12 # run job 1 script |
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13 sh job-1-script.sh |
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14 |
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15 |
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16 #========== build and run job 2 script ============ |
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17 cat >job_2_script.sh <<EOF |
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18 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT -------------- |
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19 |
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20 |
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21 #------------ END OF SHELL SCRIPT ------------------------------------------ |
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22 EOF |
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23 |
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24 # run job 2 script |
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25 sh job_2_script.sh |