annotate build-and-run-job-scripts.sh @ 6:d961c2f5e172 draft

planemo upload commit 0b6e8a54187fd05c2bd373c8a0d7d23590240404-dirty
author mingchen0919
date Mon, 14 May 2018 14:32:06 -0400
parents b69138a05735
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
1 # run job scripts within the tool outputs directory
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
2 cd ${REPORT_FILES_PATH}
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
3
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
4 #========== build and run job 1 script ============
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
5 cat >job-1-script.sh <<EOF
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
6 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT --------------
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
7
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
8
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
9 #------------ END OF SHELL SCRIPT ------------------------------------------
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
10 EOF
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
11
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
12 # run job 1 script
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
13 sh job-1-script.sh
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
14
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
15
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
16 #========== build and run job 2 script ============
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
17 cat >job_2_script.sh <<EOF
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
18 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT --------------
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
19
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
20
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
21 #------------ END OF SHELL SCRIPT ------------------------------------------
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
22 EOF
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
23
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
24 # run job 2 script
b69138a05735 planemo upload commit 7d0e1985fcb1e7dedf3eb76569095f747fc3a330-dirty
mingchen0919
parents:
diff changeset
25 sh job_2_script.sh