annotate build-and-run-job-scripts.sh @ 10:fda07562f04a draft

planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
author mingchen0919
date Tue, 01 May 2018 10:01:46 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
10
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
1 # run job scripts within the tool outputs directory
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
2 cd ${REPORT_FILES_PATH}
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
3
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
4 #========== build and run job 1 script ============
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
5 cat >job-1-script.sh <<EOF
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
6 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT --------------
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
7
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
8
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
9 #------------ END OF SHELL SCRIPT ------------------------------------------
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
10 EOF
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
11
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
12 # run job 1 script
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
13 sh job-1-script.sh
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
14
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
15
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
16 #========== build and run job 2 script ============
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
17 cat >job_2_script.sh <<EOF
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
18 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT --------------
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
19
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
20
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
21 #------------ END OF SHELL SCRIPT ------------------------------------------
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
22 EOF
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
23
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
24 # run job 2 script
fda07562f04a planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff changeset
25 sh job_2_script.sh