view aurora_demo_site_3_r.Rmd @ 1:5808dc52afe8 draft default tip

demo

---
title: 'R script'
output: html_document
---

```{r setup, include=FALSE, warning=FALSE, message=FALSE}
knitr::opts_chunk$set(
  echo = TRUE, 
  error = TRUE
)
```


Finally, we use R script to import the data and generate a heatmap.

```{r warning=FALSE, message=FALSE}
heatmap_data = read.table(opt$X_O, header = FALSE, stringsAsFactors = FALSE)
knitr::kable(heatmap_data)
pheatmap::pheatmap(heatmap_data, cluster_rows = FALSE, cluster_cols = FALSE)
```