changeset 2:09e82d13bed7 draft default tip

demo

--- a/aurora_demo.Rmd	Sat Mar 10 03:02:05 2018 -0500
+++ b/aurora_demo.Rmd	Sat Mar 10 03:10:07 2018 -0500
@@ -8,7 +8,6 @@
   echo = TRUE, 
   error = TRUE
 )
-library(ggplot2)
 ```
 
 
@@ -45,12 +44,6 @@
 ```{r warning=FALSE, message=FALSE}
 heatmap_data = read.table(opt$X_O, header = FALSE, stringsAsFactors = FALSE)
 knitr::kable(heatmap_data)
+pheatmap::pheatmap(heatmap_data, cluster_rows = FALSE, cluster_cols = FALSE)
 ```
 
-```{r}
-df = reshape2::melt(heatmap_data)
-ggplot(data = df) +
-  geom_tile(mapping = aes(x = variable, y = value, fill = value))
-```
-
-

--- a/aurora_demo.sh	Sat Mar 10 03:02:05 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-Rscript '${__tool_directory__}/aurora_demo_render.R'
-
-      -r $row_number
-      -c $column_number
-
-      -R $report
-      -O $heatmap_data
-
-      -T '${__tool_directory__}'
\ No newline at end of file

--- a/aurora_demo.xml	Sat Mar 10 03:02:05 2018 -0500
+++ b/aurora_demo.xml	Sat Mar 10 03:10:07 2018 -0500
@@ -26,7 +26,7 @@
         <param type="integer" name="column_number" label="Number of columns" optional="False" value="5"/>
     </inputs>
     <outputs>
-        <data name="heatmap_data" format="txt" hidden="false"/>
+        <data name="heatmap_data" format="tabular" hidden="false" label="aurora demo output"/>
         <data name="report" format="html" label="aurora demo report" hidden="false"/>
     </outputs>
     <citations>