Mercurial > repos > mingchen0919 > aurora_bdss_url
view build-and-run-job-scripts.sh @ 5:f54745885931 draft
planemo upload for repository https://github.com/feltus/BDSS
author | mingchen0919 |
---|---|
date | Tue, 12 Jun 2018 00:11:42 -0400 |
parents | 0d15928a648c |
children | af2e4c66261f |
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# run job scripts within the tool outputs directory cd ${REPORT_FILES_PATH} mkdir download_dir #========== build and run bdss-download.sh script ============ echo 'export PATH=/main/sites/galaxy/galaxy/tools/_conda/bin:$PATH' > bdss-download.sh echo 'for u in $(echo $X_u | sed "s/,/ /g");' >> bdss-download.sh echo 'do' >> bdss-download.sh echo ' bdss transfer --destination download_dir -u $u' >> bdss-download.sh echo 'done' >> bdss-download.sh sh bdss-download.sh