Mercurial > repos > mingchen0919 > aurora_bdss_url

changeset 5:f54745885931 draft

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planemo upload for repository https://github.com/feltus/BDSS
author mingchen0919
date Tue, 12 Jun 2018 00:11:42 -0400
parents 41c25558889a
children af2e4c66261f
files build-and-run-job-scripts.sh
diffstat 1 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/build-and-run-job-scripts.sh	Mon Jun 11 23:56:49 2018 -0400
+++ b/build-and-run-job-scripts.sh	Tue Jun 12 00:11:42 2018 -0400
@@ -3,11 +3,10 @@
 mkdir download_dir
 
 #========== build and run bdss-download.sh script ============
-echo 'for u in $(echo $X_u | sed "s/,/ /g");' > bdss-download.sh
+echo 'export PATH=/main/sites/galaxy/galaxy/tools/_conda/bin:$PATH' > bdss-download.sh
+echo 'for u in $(echo $X_u | sed "s/,/ /g");' >> bdss-download.sh
 echo 'do' >> bdss-download.sh
 echo '  bdss transfer --destination download_dir -u $u' >> bdss-download.sh
 echo 'done' >> bdss-download.sh
 
-
-echo 'export PATH=/main/sites/galaxy/galaxy/tools/_conda/bin:$PATH'
 sh bdss-download.sh