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view build-and-run-job-scripts.sh @ 3:9d42c3633b3f draft

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planemo upload for repository https://github.com/feltus/BDSS
author mingchen0919
date Mon, 11 Jun 2018 23:50:58 -0400
parents 0d15928a648c
children f54745885931
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# run job scripts within the tool outputs directory
cd ${REPORT_FILES_PATH}
mkdir download_dir

#========== build and run bdss-download.sh script ============
echo 'for u in $(echo $X_u | sed "s/,/ /g");' > bdss-download.sh
echo 'do' >> bdss-download.sh
echo '  bdss transfer --destination download_dir -u $u' >> bdss-download.sh
echo 'done' >> bdss-download.sh


echo 'export PATH=/main/sites/galaxy/galaxy/tools/_conda/bin:$PATH'
sh bdss-download.sh