Mercurial > repos > mingchen0919 > aurora_bdss_url
diff build-and-run-job-scripts.sh @ 2:0d15928a648c draft
planemo upload for repository https://github.com/feltus/BDSS
| author | mingchen0919 |
|---|---|
| date | Mon, 11 Jun 2018 23:50:10 -0400 |
| parents | a110308993be |
| children | f54745885931 |
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--- a/build-and-run-job-scripts.sh Mon Jun 11 23:40:40 2018 -0400 +++ b/build-and-run-job-scripts.sh Mon Jun 11 23:50:10 2018 -0400 @@ -3,12 +3,11 @@ mkdir download_dir #========== build and run bdss-download.sh script ============ -echo 'export PATH=/main/sites/galaxy/galaxy/tools/_conda/bin:$PATH' > bdss-download.sh - -echo 'for u in $(echo $X_u | sed "s/,/ /g");' >> bdss-download.sh +echo 'for u in $(echo $X_u | sed "s/,/ /g");' > bdss-download.sh echo 'do' >> bdss-download.sh echo ' bdss transfer --destination download_dir -u $u' >> bdss-download.sh echo 'done' >> bdss-download.sh +echo 'export PATH=/main/sites/galaxy/galaxy/tools/_conda/bin:$PATH' sh bdss-download.sh