Mercurial > repos > mingchen0919 > aurora_bdss_sra

annotate build-and-run-job-scripts.sh @ 0:759232961286 draft

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planemo upload for repository https://github.com/feltus/BDSS
author mingchen0919
date Tue, 12 Jun 2018 09:24:06 -0400
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759232961286 planemo upload for repository https://github.com/feltus/BDSS
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1 # run job scripts within the tool outputs directory
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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2 cd ${REPORT_FILES_PATH}
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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3
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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4 #========== build and run job 1 script ============
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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5 cat >job-1-script.sh <<EOF
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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6 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT --------------
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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759232961286 planemo upload for repository https://github.com/feltus/BDSS
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9 #------------ END OF SHELL SCRIPT ------------------------------------------
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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10 EOF
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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759232961286 planemo upload for repository https://github.com/feltus/BDSS
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12 # run job 1 script
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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13 sh job-1-script.sh
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16 #========== build and run job 2 script ============
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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17 cat >job_2_script.sh <<EOF
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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18 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT --------------
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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759232961286 planemo upload for repository https://github.com/feltus/BDSS
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759232961286 planemo upload for repository https://github.com/feltus/BDSS
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21 #------------ END OF SHELL SCRIPT ------------------------------------------
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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22 EOF
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23
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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24 # run job 2 script
759232961286 planemo upload for repository https://github.com/feltus/BDSS
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25 sh job_2_script.sh