Mercurial > repos > melissacline > xena_import
changeset 6:8d87f0ecc08d
Removed some debugging messages, which I hope we are now done with
| author | melissacline |
|---|---|
| date | Thu, 04 Sep 2014 15:41:37 -0700 |
| parents | f1bc70b543e7 |
| children | 4010d0fae297 |
| files | tool_dependencies.xml xena_import.py |
| diffstat | 2 files changed, 6 insertions(+), 1 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Sep 04 14:57:10 2014 -0700 +++ b/tool_dependencies.xml Thu Sep 04 15:41:37 2014 -0700 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="installXena" version="1.0"> - <repository toolshed="http://http://medbook.ucsc.edu:9009/" name="start_xena" owner="melissacline" changeset_revision="3e4683c94d8d"/> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="start_xena" owner="melissacline" changeset_revision="0676a227dbc6"/> </package> </tool_dependency>
--- a/xena_import.py Thu Sep 04 14:57:10 2014 -0700 +++ b/xena_import.py Thu Sep 04 15:41:37 2014 -0700 @@ -30,6 +30,11 @@ genomicDataFilename = args.genomicDataPathname.split("/")[-1] jsonMetadataPathname = "%s/%s.json" % (args.xenaInputDir, genomicDataFilename) + fp = open("/Users/melissacline/tmp/xena.out", "w") + fp.write("xena base dir %s\n" % (xenaBaseDir)) + fp.write(cmdline) + fp.close() + fp = open(jsonMetadataPathname, "w") fp.write("%s\n" % (jsonMetadata)) fp.close()