# HG changeset patch
# User melissacline
# Date 1409870497 25200
# Node ID 8d87f0ecc08d341dc1e48b03e4c8083849617e46
# Parent  f1bc70b543e7f5a9be52fb758c9485f0f731d79e
Removed some debugging messages, which I hope we are now done with

diff -r f1bc70b543e7 -r 8d87f0ecc08d tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Sep 04 14:57:10 2014 -0700
+++ b/tool_dependencies.xml	Thu Sep 04 15:41:37 2014 -0700
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="installXena" version="1.0">
-    <repository toolshed="http://http://medbook.ucsc.edu:9009/" name="start_xena" owner="melissacline" changeset_revision="3e4683c94d8d"/>
+    <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="start_xena" owner="melissacline" changeset_revision="0676a227dbc6"/>
   </package>
 </tool_dependency>
diff -r f1bc70b543e7 -r 8d87f0ecc08d xena_import.py
--- a/xena_import.py	Thu Sep 04 14:57:10 2014 -0700
+++ b/xena_import.py	Thu Sep 04 15:41:37 2014 -0700
@@ -30,6 +30,11 @@
     genomicDataFilename = args.genomicDataPathname.split("/")[-1]
     jsonMetadataPathname = "%s/%s.json" % (args.xenaInputDir, 
                                            genomicDataFilename)
+    fp = open("/Users/melissacline/tmp/xena.out", "w")
+    fp.write("xena base dir %s\n" % (xenaBaseDir))
+    fp.write(cmdline)
+    fp.close()
+
     fp = open(jsonMetadataPathname, "w")
     fp.write("%s\n" % (jsonMetadata))
     fp.close()