changeset 22:fcef0cd87106

Uploaded

--- a/ucsc_xena_datapages.xml	Thu Mar 19 14:13:04 2015 -0700
+++ b/ucsc_xena_datapages.xml	Tue Jun 02 19:11:39 2015 -0400
@@ -4,13 +4,13 @@
     the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
     initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
 -->
-<tool name="Explore Data in Xena" id="ucsc_xena_datapages" tool_type="data_source">
+<tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source">
     <description>Browse the UCSC Xena Data Pages.</description>
-    <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>   
-    <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/datapages" check_values="false" method="get">
-        <display>go to UCSC Xena Data $GALAXY_URL</display>
+    <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command>   
+   <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/datapages/" check_values="false" method="get">
+         <display>Explore the data in Xena $GALAXY_URL</display>
         <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
-        <param name="tool_id" type="hidden" value="ucsc_xena_datapages" />
+        <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
     </inputs>
     <request_param_translation>
         <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
@@ -19,7 +19,6 @@
     <uihints minwidth="800"/>
     <outputs>
         <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
-        <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/>
     </outputs>
     <options sanitize="False" refresh="True"/>
 </tool>