comparison ucsc_xenabrowser.xml @ 25:8669770eb1cc

Uploaded, to try to fix a merge problem.
author melissacline
date Tue, 02 Jun 2015 19:17:41 -0400
parents
children fc6f93710384
comparison
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24:975abd814626 25:8669770eb1cc
1 <?xml version="1.0"?>
2 <!--
3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
6 -->
7 <tool name="UCSC Xena Browser" id="ucsc_xenabrowser" tool_type="data_source">
8 <description>Run the UCSC Xena Browser as a Galaxy tool.</description>
9 <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>
10 <inputs action="https://genome-cancer.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get">
11 <display>go to UCSC Xena Browser $GALAXY_URL</display>
12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
13 <param name="tool_id" type="hidden" value="ucsc_xenabrowser" />
14 </inputs>
15 <request_param_translation>
16 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
17 <request_param galaxy_name="URL" remote_name="URL" missing="" />
18 </request_param_translation>
19 <uihints minwidth="800"/>
20 <outputs>
21 <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
22 <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/>
23 </outputs>
24 <options sanitize="False" refresh="True"/>
25 </tool>