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1 <?xml version="1.0"?>
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2 <!--
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3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
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4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
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5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
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6 July 13, 2015
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7 -->
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8 <tool name="UCSC Xena Browser" id="ucsc_xenabrowser" tool_type="data_source">
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9 <description>Run the UCSC Xena Browser as a Galaxy tool.</description>
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10 <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>
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11 <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get">
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12 <display>go to UCSC Xena Browser $GALAXY_URL</display>
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13 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
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14 <param name="tool_id" type="hidden" value="ucsc_xenabrowser" />
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15 </inputs>
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16 <request_param_translation>
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17 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
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18 <request_param galaxy_name="URL" remote_name="URL" missing="" />
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19 </request_param_translation>
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20 <uihints minwidth="800"/>
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21 <outputs>
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22 <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
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23 <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/>
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24 </outputs>
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25 <options sanitize="False" refresh="True"/>
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26 </tool>
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