annotate ucsc_xena_datapages.xml @ 27:5c7df318e87b

Uploaded
author melissacline
date Tue, 02 Jun 2015 19:26:17 -0400
parents 975abd814626
children fc6f93710384
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
24
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
1 <?xml version="1.0"?>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
2 <!--
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
6 -->
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
7 <tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source">
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
8 <description>Browse the UCSC Xena Data Pages.</description>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
9 <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
10 <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/datapages/" check_values="false" method="get">
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
11 <display>Explore the data in Xena $GALAXY_URL</display>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
13 <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
14 </inputs>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
15 <request_param_translation>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
16 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
17 <request_param galaxy_name="URL" remote_name="URL" missing="" />
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
18 </request_param_translation>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
19 <uihints minwidth="800"/>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
20 <outputs>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
21 <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
22 </outputs>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
23 <options sanitize="False" refresh="True"/>
975abd814626 Uploaded, to try to fix a merge problem.
melissacline
parents:
diff changeset
24 </tool>