Mercurial > repos > melissacline > ucsc_xena_platform

annotate ucsc_xenabrowser.xml @ 41:02b0824c7d60

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Download data from any hub in the federated xena platform
author jingchunzhu <jingchunzhu@gmail.com>
date Mon, 27 Jul 2015 10:05:22 -0700
parents 066ae9df2d27
children da86478b1d64
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1 <?xml version="1.0"?>
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jingchunzhu <jingchunzhu@gmail.com>
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2 <tool name="Xena Visualization" id="ucsc_xenabrowser" tool_type="data_source">
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3 <description>UCSC Xena Browser visualization</description>
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4 <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>
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4a3c0e53d176 Updating the xena urls
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5 <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get">
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6 <display>go to UCSC Xena Browser $GALAXY_URL</display>
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7 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
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8 <param name="tool_id" type="hidden" value="ucsc_xenabrowser" />
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9 </inputs>
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10 <request_param_translation>
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11 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
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12 <request_param galaxy_name="URL" remote_name="URL" missing="" />
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13 </request_param_translation>
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14 <uihints minwidth="800"/>
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15 <outputs>
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16 <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
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17 <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/>
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18 </outputs>
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19 <options sanitize="False" refresh="True"/>
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20 </tool>