Mercurial > repos > melissacline > ucsc_cancer_utilities
changeset 40:72dc9215623d
modify help
| author | jingchunzhu |
|---|---|
| date | Fri, 31 Jul 2015 21:29:17 -0700 |
| parents | 61f03b481b0d |
| children | 9806198df91f |
| files | segToGeneMatrix.xml segToMatrix.xml |
| diffstat | 2 files changed, 4 insertions(+), 6 deletions(-) [+] |
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--- a/segToGeneMatrix.xml Fri Jul 31 20:38:27 2015 -0700 +++ b/segToGeneMatrix.xml Fri Jul 31 21:29:17 2015 -0700 @@ -1,6 +1,6 @@ <tool id="segToGeneMatrix" name="segToGeneMatrix" version="0.0.1"> <description> - Convert segmented copy number data to gene based matrix data + Convert segmented copy number data to gene-level matrix data </description> <command interpreter="python"> seg2matrix/mapSegToGeneMatrix.py $input $__tool_directory__/seg2matrix/$refGene.assembly $outputMatrix @@ -24,9 +24,8 @@ <data name="outputMatrix" format="tabular" label="gene-level copy number matrix" /> </outputs> <help> - ***Convert segmented copy number data for input into xena*** - Given a segmented copy number data file, convert it into gene based matrix data + **Given a segmented copy number data file, convert it into gene-level matrix data, also xena ready** Output File no 1. matrix file
--- a/segToMatrix.xml Fri Jul 31 20:38:27 2015 -0700 +++ b/segToMatrix.xml Fri Jul 31 21:29:17 2015 -0700 @@ -1,6 +1,6 @@ <tool id="segToMatrix" name="segToMatrix" version="0.0.1"> <description> - Prep segmented copy number data for Xena + Prepare segmented copy number data for Xena </description> <command interpreter="python"> seg2matrix/segToMatrixGalaxy.py $input $__tool_directory__/seg2matrix/$refGene.assembly $outputMatrix $outputProbeMap @@ -25,9 +25,8 @@ <data name="outputProbeMap" format="tabular" label="associated probemap"/> </outputs> <help> - ***Convert segmented copy number data for input into xena*** - Given a segmented copy number data file, convert it into xena ready data files. + **Given a segmented copy number data file, convert it into xena ready matrix file.** Output File no 1. matrix file