# HG changeset patch
# User jingchunzhu
# Date 1438403357 25200
# Node ID 72dc9215623d4d8d93679fcec71edfcbe24b2196
# Parent  61f03b481b0d8437096d0c2f850c06096c921c0d
modify help

diff -r 61f03b481b0d -r 72dc9215623d segToGeneMatrix.xml
--- a/segToGeneMatrix.xml	Fri Jul 31 20:38:27 2015 -0700
+++ b/segToGeneMatrix.xml	Fri Jul 31 21:29:17 2015 -0700
@@ -1,6 +1,6 @@
 <tool id="segToGeneMatrix" name="segToGeneMatrix" version="0.0.1">
   <description>
-    Convert segmented copy number data to gene based matrix data
+    Convert segmented copy number data to gene-level matrix data
   </description>
   <command interpreter="python">
     seg2matrix/mapSegToGeneMatrix.py $input $__tool_directory__/seg2matrix/$refGene.assembly $outputMatrix
@@ -24,9 +24,8 @@
     <data name="outputMatrix" format="tabular" label="gene-level copy number matrix" />
   </outputs>
   <help>
-    ***Convert segmented copy number data for input into xena***
 
-    Given a segmented copy number data file, convert it into gene based matrix data
+    **Given a segmented copy number data file, convert it into gene-level matrix data, also xena ready**
 
     Output File no 1. matrix file
 
diff -r 61f03b481b0d -r 72dc9215623d segToMatrix.xml
--- a/segToMatrix.xml	Fri Jul 31 20:38:27 2015 -0700
+++ b/segToMatrix.xml	Fri Jul 31 21:29:17 2015 -0700
@@ -1,6 +1,6 @@
 <tool id="segToMatrix" name="segToMatrix" version="0.0.1">
   <description>
-    Prep segmented copy number data for Xena
+    Prepare segmented copy number data for Xena
   </description>
   <command interpreter="python">
     seg2matrix/segToMatrixGalaxy.py $input $__tool_directory__/seg2matrix/$refGene.assembly $outputMatrix $outputProbeMap
@@ -25,9 +25,8 @@
     <data name="outputProbeMap" format="tabular" label="associated probemap"/>
   </outputs>
   <help>
-    ***Convert segmented copy number data for input into xena***
 
-    Given a segmented copy number data file, convert it into xena ready data files.
+    **Given a segmented copy number data file, convert it into xena ready matrix file.**
 
     Output File no 1. matrix file