Mercurial > repos > melissacline > ucsc_cancer_utilities

view seg2matrix/getRefGene_hg18.sh @ 48:a38cc72edd75

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
xena header
author jingchunzhu
date Fri, 14 Aug 2015 00:04:41 -0700
parents ab20c0d04f4a
children
line wrap: on
line source

#!/bin/bash

curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/refGene.txt.gz
gunzip -c refGene.txt.gz > refGene_hg18
echo '{ "cgdata" : {"name" : "refGene_hg18", "type" : "genePred", "assembly" : "hg18"} }' > refGene_hg18.json