Mercurial > repos > melissacline > ucsc_cancer_utilities

view seg2matrix/getRefGene_hg18.sh @ 54:59dbe857f5d4

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
introduce normal_CNV parameter
author jingchunzhu
date Thu, 17 Sep 2015 22:03:04 -0700
parents ab20c0d04f4a
children
line wrap: on
line source

#!/bin/bash

curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/refGene.txt.gz
gunzip -c refGene.txt.gz > refGene_hg18
echo '{ "cgdata" : {"name" : "refGene_hg18", "type" : "genePred", "assembly" : "hg18"} }' > refGene_hg18.json