Mercurial > repos > melissacline > ucsc_cancer_utilities

diff segToMatrix.xml @ 39:61f03b481b0d

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new tool
author jingchunzhu
date Fri, 31 Jul 2015 20:38:27 -0700
parents 84eb11adc22f
children 72dc9215623d
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line diff
--- a/segToMatrix.xml	Fri Jul 31 15:29:53 2015 -0700
+++ b/segToMatrix.xml	Fri Jul 31 20:38:27 2015 -0700
@@ -3,7 +3,7 @@
     Prep segmented copy number data for Xena
   </description>
   <command interpreter="python">
-    seg2matrix/segToMatrixGalaxy.py $input seg2matrix/$refGene.assembly $outputMatrix $outputProbeMap
+    seg2matrix/segToMatrixGalaxy.py $input $__tool_directory__/seg2matrix/$refGene.assembly $outputMatrix $outputProbeMap
   </command>
   <inputs>
     <param name="input" format="tabular" type="data" multiple="false" label="Input segmented copy number data" />