Mercurial > repos > melissacline > ucsc_cancer_utilities

comparison segToMatrix.xml @ 39:61f03b481b0d

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new tool
author jingchunzhu
date Fri, 31 Jul 2015 20:38:27 -0700
parents 84eb11adc22f
children 72dc9215623d
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38:84eb11adc22f 39:61f03b481b0d
1 <tool id="segToMatrix" name="segToMatrix" version="0.0.1"> 1 <tool id="segToMatrix" name="segToMatrix" version="0.0.1">
2 <description> 2 <description>
3 Prep segmented copy number data for Xena 3 Prep segmented copy number data for Xena
4 </description> 4 </description>
5 <command interpreter="python"> 5 <command interpreter="python">
6 seg2matrix/segToMatrixGalaxy.py $input seg2matrix/$refGene.assembly $outputMatrix $outputProbeMap 6 seg2matrix/segToMatrixGalaxy.py $input $__tool_directory__/seg2matrix/$refGene.assembly $outputMatrix $outputProbeMap
7 </command> 7 </command>
8 <inputs> 8 <inputs>
9 <param name="input" format="tabular" type="data" multiple="false" label="Input segmented copy number data" /> 9 <param name="input" format="tabular" type="data" multiple="false" label="Input segmented copy number data" />
10 <conditional name="refGene"> 10 <conditional name="refGene">
11 <param name="assembly_select" type="select" label="Which human genome assembly is your input segmented copy number data?"> 11 <param name="assembly_select" type="select" label="Which human genome assembly is your input segmented copy number data?">