Mercurial > repos > melissacline > ucsc_cancer_utilities

comparison segToGeneMatrix.xml @ 57:eef100efcc4c

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fix
author jingchunzhu
date Fri, 18 Sep 2015 11:11:15 -0700
parents 2a240b005731
children bf57076e27b9
comparison
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56:2a240b005731 57:eef100efcc4c
29 **Given a segmented copy number data file, convert it into gene-level matrix data, also xena ready** 29 **Given a segmented copy number data file, convert it into gene-level matrix data, also xena ready**
30 30
31 1. Input data file format: tab-deliminated 31 1. Input data file format: tab-deliminated
32 32
33 ======= ===== ======= ===== ====== ====== 33 ======= ===== ======= ===== ====== ======
34 sample chr start end strand value 34 sample chr start end strand value
35 ======= ===== ======= ===== ====== ====== 35 ======= ===== ======= ===== ====== ======
36 sample1 chr1 1 100 . 0.5 36 sample1 chr1 1 100 . 0.5
37 sample2 chr1 101 1000 . 1.5 37 sample2 chr1 101 1000 . 1.5
38 sample3 chr1 1000 2000 . -0.5 38 sample3 chr1 1000 2000 . -0.5
39 ... ... ... ... ... ... 39 ... ... ... ... ... ...