Mercurial > repos > melissacline > ucsc_cancer_utilities
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fixFri, 18 Sep 2015 11:11:15 -0700, by jingchunzhu
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better instructions on browserFri, 18 Sep 2015 11:03:59 -0700, by jingchunzhu
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merge mutation data conform to new mutationVector data standardFri, 18 Sep 2015 10:24:39 -0700, by jingchunzhu
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introduce normal_CNV parameterThu, 17 Sep 2015 22:03:04 -0700, by jingchunzhu
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fixThu, 17 Sep 2015 15:38:53 -0700, by jingchunzhu
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better handle of input fileThu, 17 Sep 2015 15:00:45 -0700, by jingchunzhu
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better handle of inputThu, 17 Sep 2015 14:33:21 -0700, by jingchunzhu
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fixTue, 25 Aug 2015 23:42:17 -0700, by jingchunzhu
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multiple filesFri, 14 Aug 2015 00:17:55 -0700, by jingchunzhu
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xena headerFri, 14 Aug 2015 00:04:41 -0700, by jingchunzhu
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parse snpEff outputThu, 13 Aug 2015 23:26:33 -0700, by jingchunzhu
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add snpEff codeThu, 13 Aug 2015 21:49:03 -0700, by jingchunzhu
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start vcfToXenaThu, 13 Aug 2015 21:48:02 -0700, by jingchunzhu
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fixFri, 07 Aug 2015 00:25:35 -0700, by jingchunzhu
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improve messagesFri, 07 Aug 2015 00:13:13 -0700, by jingchunzhu
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fixThu, 06 Aug 2015 00:30:49 -0700, by jingchunzhu
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fixThu, 06 Aug 2015 00:27:05 -0700, by jingchunzhu
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modify helpFri, 31 Jul 2015 21:29:17 -0700, by jingchunzhu
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new toolFri, 31 Jul 2015 20:38:27 -0700, by jingchunzhu
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modifyFri, 31 Jul 2015 15:29:53 -0700, by jingchunzhu
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Updated synapseGetDataset to look at the filename rather than the (no longer existant) content type field to determine if the data is in zip formatMon, 27 Jul 2015 16:29:24 -0700, by melissacline
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Removing the dependency on synapseclient version, testing that...Mon, 27 Jul 2015 15:55:22 -0700, by melissacline
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modifyFri, 24 Jul 2015 16:14:36 -0700, by jingchunzhu
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remove binaryFri, 24 Jul 2015 14:56:37 -0700, by jingchunzhu
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remove binary fileFri, 24 Jul 2015 14:50:34 -0700, by jingchunzhu
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change segToMatrix.xml locationFri, 24 Jul 2015 14:09:57 -0700, by jingchunzhu
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add seg2matrix toolFri, 24 Jul 2015 13:10:11 -0700, by jingchunzhu
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Rolling back synapseClient to version 1.0Wed, 22 Jul 2015 17:04:25 -0700, by melissacline
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Rolling the synapseClient dependency back to version 1.1Wed, 22 Jul 2015 16:59:35 -0700, by melissacline
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Rolling back synapseClient to version 1.2Wed, 22 Jul 2015 16:41:33 -0700, by melissacline
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Updating the synapse package version to 1.3Wed, 22 Jul 2015 16:25:40 -0700, by melissacline
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Trying without the install version specification for synapseClientMon, 20 Jul 2015 15:56:06 -0700, by melissacline
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Fixing another merge conflictMon, 20 Jul 2015 15:43:29 -0700, by melissacline
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Fixing a merge conflictMon, 20 Jul 2015 15:41:22 -0700, by melissacline
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Fixed uppercase/lowercase mismatch problemMon, 20 Jul 2015 15:33:07 -0700, by melissacline
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Rolled the synapseClient dependency back to version 1.0Mon, 20 Jul 2015 15:24:46 -0700, by melissacline
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Merged with head, tweaked labels on merge mutation data toolFri, 20 Mar 2015 16:38:46 -0700, by melissacline
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Debugged the merge mutation data toolFri, 20 Mar 2015 15:50:22 -0700, by melissacline
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UploadedFri, 20 Mar 2015 18:09:15 -0400, by melissacline
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UploadedFri, 20 Mar 2015 18:08:54 -0400, by melissacline
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Cleaned up the output dataset names for Merge Genomic DatasetsFri, 20 Mar 2015 14:22:02 -0700, by melissacline
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Trying to get out of merge hellTue, 10 Mar 2015 19:37:47 -0700, by melissacline
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Trying one more thing for synapse versioningTue, 10 Mar 2015 19:35:51 -0700, by melissacline
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Committing changes that hadn't made it in yet, merge hellTue, 10 Mar 2015 19:32:14 -0700, by melissacline
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Setting the explicing synapse client version to 1.2Tue, 10 Mar 2015 19:29:10 -0700, by melissacline
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Trying again to commit missing changes...Tue, 10 Mar 2015 19:25:49 -0700, by melissacline
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Experimenting with no version info in the tool dependenciesTue, 10 Mar 2015 19:23:40 -0700, by melissacline
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Removed an extraneous line of code from the last revisionTue, 10 Mar 2015 19:15:25 -0700, by melissacline
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Updated the synapseclient version numberTue, 10 Mar 2015 19:12:38 -0700, by melissacline
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When opening files for reading, changed the open() mode from 'r' to 'U' to accommodate non-unix systemsTue, 10 Mar 2015 11:16:56 -0700, by melissacline
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Expanded the functionality of the merge genomic datasets tool, to generate an output dataset with the file (or label) indicating where each column came fromMon, 09 Mar 2015 19:58:03 -0700, by melissacline
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UploadedThu, 12 Feb 2015 01:15:58 -0500, by melissacline
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UploadedThu, 12 Feb 2015 01:15:30 -0500, by melissacline
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Added a proper first lineWed, 11 Feb 2015 17:28:52 -0800, by melissacline
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Creating a tool to merge genomic datasetsWed, 11 Feb 2015 16:44:33 -0800, by melissacline
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Trying one more time to get this push to happen...Tue, 27 Jan 2015 17:23:38 -0800, by melissacline
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Updated synapseGetDataset.py to automatically unzip if the file downloaded is a zip archive.Tue, 27 Jan 2015 16:49:56 -0800, by melissacline
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UploadedWed, 14 Jan 2015 13:54:03 -0500, by melissacline