Mercurial > repos > melissacline > ucsc_cancer_utilities
comparison seg2matrix/CGData/BaseTable.py @ 59:b88b95642f59
fix
| author | jingchunzhu |
|---|---|
| date | Tue, 22 Sep 2015 15:41:03 -0700 |
| parents | 3a036a34c362 |
| children |
comparison
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| 58:3e5680fecd7a | 59:b88b95642f59 |
|---|---|
| 73 if 'columnDef' in self['cgformat'] and col in self['cgformat']['columnDef'] and 'optional' in self['cgformat']['columnDef'][col]: | 73 if 'columnDef' in self['cgformat'] and col in self['cgformat']['columnDef'] and 'optional' in self['cgformat']['columnDef'][col]: |
| 74 isOptional = self['cgformat']['columnDef'][col]['optional'] | 74 isOptional = self['cgformat']['columnDef'][col]['optional'] |
| 75 if len(row) > i: | 75 if len(row) > i: |
| 76 try: | 76 try: |
| 77 setattr(r, col, colType[col](row[i])) | 77 setattr(r, col, colType[col](row[i])) |
| 78 except ValueError: | 78 except ValueError: |
| 79 skip=1 | |
| 80 break | |
| 79 raise ValueError( "col invalid type %s on line %d" % (row[i], linenum)) | 81 raise ValueError( "col invalid type %s on line %d" % (row[i], linenum)) |
| 80 else: | 82 else: |
| 81 if isOptional: | 83 if isOptional: |
| 82 setattr(r, col, None) | 84 setattr(r, col, None) |
| 83 else: | 85 else: |