Mercurial > repos > melissacline > ucsc_cancer_utilities

annotate seg2matrix/CGData/ProbeMap.py @ 60:bf57076e27b9 default tip

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change genomicSegment input data
author jingchunzhu@gmail.com
date Tue, 27 Oct 2015 16:07:09 -0700
parents ab20c0d04f4a
children
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2 import CGData.BaseTable
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5 class ProbeMap(CGData.BaseTable.BaseTable):
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6 __format__ = {
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7 "name" : "probeMap",
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8 "form" : "table",
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9 "columnOrder" : [
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10 "probe",
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11 "aliases",
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12 "chrom",
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13 "chrom_start",
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14 "chrom_end",
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15 "strand"
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16 ],
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17 "primaryKey" : "probe",
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18 "columnDef" : {
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19 "chrom_start" : { "type" : "int", "index" : 1 },
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20 "chrom_end" : { "type" : "int", "index" : 1 }
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21 }
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22 }
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24 def __init__(self):
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25 CGData.BaseTable.BaseTable.__init__(self)
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