Mercurial > repos > melissacline > ucsc_cancer_utilities

diff seg2matrix/CGData/ProbeMap.py @ 31:ab20c0d04f4a

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add seg2matrix tool
author jingchunzhu
date Fri, 24 Jul 2015 13:10:11 -0700
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/seg2matrix/CGData/ProbeMap.py	Fri Jul 24 13:10:11 2015 -0700
@@ -0,0 +1,26 @@
+
+import CGData.BaseTable
+
+
+class ProbeMap(CGData.BaseTable.BaseTable):
+    __format__ =  {
+            "name" : "probeMap",
+            "form" : "table",
+            "columnOrder" : [
+                "probe",
+                "aliases",
+                "chrom",
+                "chrom_start",
+                "chrom_end",
+                "strand"
+            ],
+            "primaryKey" : "probe",
+            "columnDef" : {
+				"chrom_start" : { "type" : "int", "index" : 1 },
+				"chrom_end" : { "type" : "int", "index" : 1 }
+            }
+        }
+        
+    def __init__(self):
+        CGData.BaseTable.BaseTable.__init__(self)
+