Mercurial > repos > melissacline > ucsc_cancer_utilities

annotate seg2matrix/getRefGene_hg18.sh @ 46:ebf3bc09c383

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add snpEff code
author jingchunzhu
date Thu, 13 Aug 2015 21:49:03 -0700
parents ab20c0d04f4a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 #!/bin/bash
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2
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3 curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/refGene.txt.gz
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4 gunzip -c refGene.txt.gz > refGene_hg18
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5 echo '{ "cgdata" : {"name" : "refGene_hg18", "type" : "genePred", "assembly" : "hg18"} }' > refGene_hg18.json