Mercurial > repos > melissacline > ucsc_cancer_utilities

annotate seg2matrix/getRefGene_hg18.sh @ 31:ab20c0d04f4a

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add seg2matrix tool
author jingchunzhu
date Fri, 24 Jul 2015 13:10:11 -0700
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31
ab20c0d04f4a add seg2matrix tool
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1 #!/bin/bash
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2
ab20c0d04f4a add seg2matrix tool
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3 curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/refGene.txt.gz
ab20c0d04f4a add seg2matrix tool
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4 gunzip -c refGene.txt.gz > refGene_hg18
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5 echo '{ "cgdata" : {"name" : "refGene_hg18", "type" : "genePred", "assembly" : "hg18"} }' > refGene_hg18.json