Mercurial > repos > melissacline > ucsc_cancer_utilities

annotate xenaHeader.py @ 48:a38cc72edd75

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xena header
author jingchunzhu
date Fri, 14 Aug 2015 00:04:41 -0700
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48
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1 import argparse
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2 import string
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3
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4 def main():
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5 parser = argparse.ArgumentParser()
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6 parser.add_argument("output", type=str, help="outputfile")
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7 args = parser.parse_args()
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8
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9 fout= open(args.output,'w')
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10 fout.write("#"+string.join(["sample","chr","start","end","reference","alt","gene","effect","DNA_VAF","RNA_VAF","Amino_Acid_Change"],"\t")+"\n")
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11 fout.close()
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12
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13 if __name__ == '__main__':
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14 main()