Mercurial > repos > melissacline > ucsc_cancer_utilities

diff xenaHeader.py @ 48:a38cc72edd75

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xena header
author jingchunzhu
date Fri, 14 Aug 2015 00:04:41 -0700
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/xenaHeader.py	Fri Aug 14 00:04:41 2015 -0700
@@ -0,0 +1,14 @@
+import argparse
+import string
+
+def main():
+    parser = argparse.ArgumentParser()
+    parser.add_argument("output", type=str, help="outputfile")
+    args = parser.parse_args()
+
+    fout= open(args.output,'w')
+    fout.write("#"+string.join(["sample","chr","start","end","reference","alt","gene","effect","DNA_VAF","RNA_VAF","Amino_Acid_Change"],"\t")+"\n")
+    fout.close()
+
+if __name__ == '__main__':
+    main()