annotate mergeGenomicFiles.xml @ 20:914bc8ee6222

Debugged the merge mutation data tool
author melissacline
date Fri, 20 Mar 2015 15:50:22 -0700
parents 6c23a3b58eb8
children 3a259686f0fc
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
20
914bc8ee6222 Debugged the merge mutation data tool
melissacline
parents: 5
diff changeset
1 <tool id="mergeGenomicFiles" description="Merge two genomic datasets into a new dataset" name="Merge Genomic Datasets" version="0.0.1">
5
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
2 <description>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
3 Given two genomic datasets, merge them to create a third dataset with the row and column identifiers from both datasets.
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
4 </description>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
5 <command interpreter="python">
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
6 mergeGenomicMatrixFiles.py $outputC $inputA $inputB
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
7 </command>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
8 <inputs>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
9 <param name="inputA" format="tabular" type="data" label="Genomic Dataset A"/>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
10 <param name="inputB" format="tabular" type="data" label="Genomic Dataset B"/>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
11 </inputs>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
12 <outputs>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
13 <data name="outputC" format="tabular"/>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
14 </outputs>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
15 <help>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
16 ***Merge Genomic Datasets***
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
17
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
18 Given two genomic datasets, merge them to produce a third dataset that is the union of the first two. The new dataset will contain all column labels from either dataset, and all row labels from either dataset. If a row label appears in both datasets, the output dataset will contain, for that row, all values for the first set of columns, plus all values for the second set of columns. If a row label appears in the first dataset only, the output dataset will contain the values for the columns of the first dataset, and blanks (indicating missing values) for the columns of the second da
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
19 </help>
6c23a3b58eb8 Uploaded
melissacline
parents:
diff changeset
20 </tool>