Mercurial > repos > mb2013 > landtool
changeset 11:719a2d230fa2 draft
Uploaded
| author | mb2013 |
|---|---|
| date | Wed, 20 Nov 2013 07:18:42 -0500 |
| parents | dce35de9677e |
| children | c4c40e20871c |
| files | Plottool.xml |
| diffstat | 1 files changed, 36 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plottool.xml Wed Nov 20 07:18:42 2013 -0500 @@ -0,0 +1,36 @@ +<tool id="Plottool" name="Plottool"> + <description>Plottool for pca </description> + <command interpreter="Rscript">Plottool.R $input "$title" "$x_label" "$y_label" $x_column $y_column $names $output</command> + <inputs> + <param name="input" type="data" format="csv" label="PCA coordinates" /> + <param name = "title" size = "30" type = "text" value = "" label = "Main Title"/> + <param name = "x_label" size = "30" type = "text" value = "" label = "x axis label"/> + <param name = "y_label" size = "30" type = "text" value = "" label = "y axis label"/> + <param name = "x_column" size = "2" type = "integer" value = "1" label = "pca x axis"/> + <param name = "y_column" size = "2" type = "integer" value = "2" label = "pca y axis"/> + <param name = "names" type = "data" format = "csv" label = "data names"/> + </inputs> + <outputs> + <data format="png" name="output" /> + </outputs> + + + <help> +**What it does** + +Plottool for plotting of principle components + +**Input file** + +principle components coordinates (csv format) + +sample names (csv format) + +**Tip** + +Use **PCA** to generate principle components + +Use the sample names of **dtaConverter** or create your own 'sample name file' in .csv format + </help> + +</tool>