Mercurial > repos > mb2013 > landtool
changeset 13:1f8a453d1a64 draft
Uploaded
author | mb2013 |
---|---|
date | Wed, 20 Nov 2013 07:19:19 -0500 |
parents | c4c40e20871c |
children | be66787b414c |
files | plotPCACsize.xml |
diffstat | 1 files changed, 38 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/plotPCACsize.xml Wed Nov 20 07:19:19 2013 -0500 @@ -0,0 +1,38 @@ +<tool id="plotPCACsize" name="plotPCACsize"> + <description>Plottool for pca and csize</description> + <command interpreter="Rscript">plotPCACsize.R $input_PCA $input_Csize "$title" "$x_label" "$y_label" $x_column $names $output</command> + <inputs> + <param name="input_PCA" type="data" format="csv" label="PC" /> + <param name="input_Csize" type="data" format="csv" label="Csize procrustes" /> + <param name = "title" size = "30" type = "text" value = "" label = "Main Title"/> + <param name = "x_label" size = "30" type = "text" value = "" label = "x axis label"/> + <param name = "y_label" size = "30" type = "text" value = "" label = "y axis label"/> + <param name = "x_column" size = "2" type = "text" value = "1" label = "Pca "/> + <param name = "names" type = "data" format = "csv" label = "data names"/> + </inputs> + <outputs> + <data format="png" name="output" /> + </outputs> + + + <help> +**What it does** + +Plottool for plotting of principle component with centroid size + +**Input file** + +principle components coordinates (csv format) + +centroid size of samples (csv format) + +**Tip** + +Use **PCA** to generate principle components + +Use **Procrustes** to generate centroid size + + + </help> + +</tool>