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1 #Converter of dta to csv
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2 #M.Baak
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3 #9-10-2013
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4 #last update: 13-11-2013
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5
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6
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7 import sys
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8 import os
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9
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10 file_name = sys.argv[1]
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11 file_outputname = sys.argv[2]
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12 file_outputname2 = sys.argv[3]
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13
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14 def convert_dta(file_name,file_outputname):
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15
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16 read_file = open(file_name, 'r') #open file
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17 a = len(read_file.readlines())
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18 read_file2 = open(file_name, 'r') # open file second time
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19 output = open(file_outputname,'w') #output file
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20 output2 = open(file_outputname2, 'w')
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21
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22 numberlandmarks = 0
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23 header = ""
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24
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25 #for loop, coordinates, number of landmarks and name of sample will be stored in csv format
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26 for x in range(0,a):
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27 b = read_file2.readline().strip()
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28 split_tabs = b.split(' ')
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29 number_columns = len(split_tabs)
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30 if x == 0:
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31 header += b.replace(' ', '_') #name of sample
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32 if number_columns == 3: #coordinates
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33 output.write("%f,%f,%f\n"%(float(split_tabs[0]),float(split_tabs[1]),float(split_tabs[2])))
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34 numberlandmarks += 1 # number of landmarks
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35
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36 output2.write("%s\n"%(header[1:-4])) # writing header to output file
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37
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38 output.close()
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39
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40 convert_dta(file_name,file_outputname)
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41
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42
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43
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44
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