comparison stacks_tsv2bam.xml @ 6:2626e58c493e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 82e7263f3e57a29362d981e36b82b82063f12ac3

5:852044374da1

    <inputs>
        <expand macro="input_stacks_macro"/>
        <expand macro="input_cat_macro"/>
        <expand macro="input_matches_macro"/>
        <!-- TODO add BAM? -->
        <expand macro="fastq_input" fastq_optional="true" help="Paired end data or reverse reads. If a paired list is provided only the reverse reads are used in tsv2bam"/>
        <param name="popmap" type="data" format="tabular,txt" label="Population map" help="If set, matching will be done only for samples listed in this file" optional="true" argument="-M" />
        <expand macro="in_log"/>
    </inputs>

    <outputs>

6:2626e58c493e

    <inputs>
        <expand macro="input_stacks_macro"/>
        <expand macro="input_cat_macro"/>
        <expand macro="input_matches_macro"/>
        <!-- TODO add BAM? -->
        <expand macro="fastq_input" fastq_optional="true" se_option="reverse reads" help="Paired end data or reverse reads. If a paired list is provided only the reverse reads are used in tsv2bam. Leave selection empty if you analyse single end data."/>
        <param name="popmap" type="data" format="tabular,txt" label="Population map" help="If set, matching will be done only for samples listed in this file" optional="true" argument="-M" />
        <expand macro="in_log"/>
    </inputs>

    <outputs>