Mercurial > repos > matthias > stacks2_refmap
comparison test-data/ustacks/ustacks.log @ 5:466cc910d640 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
| author | matthias |
|---|---|
| date | Wed, 27 Feb 2019 09:48:50 -0500 |
| parents | bd0bf17caa4d |
| children |
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| 4:e1dbdd7175c8 | 5:466cc910d640 |
|---|---|
| 1 ustacks parameters selected: | 1 ustacks parameters selected: |
| 2 Input file: 'stacks_inputs/PopA_01.1.fq' | 2 Input file: 'stacks_inputs/PopA_01.1.fastq' |
| 3 Sample ID: 1 | 3 Sample ID: 1 |
| 4 Min depth of coverage to create a stack (m): 3 | 4 Min depth of coverage to create a stack (m): 3 |
| 5 Repeat removal algorithm: enabled | 5 Repeat removal algorithm: enabled |
| 6 Max distance allowed between stacks (M): 2 | 6 Max distance allowed between stacks (M): 2 |
| 7 Max distance allowed to align secondary reads: 4 | 7 Max distance allowed to align secondary reads: 4 |
| 43 Calling consensus sequences and haplotypes for catalog assembly... | 43 Calling consensus sequences and haplotypes for catalog assembly... |
| 44 Writing tags, SNPs, and alleles files... | 44 Writing tags, SNPs, and alleles files... |
| 45 Refetching read IDs...done. | 45 Refetching read IDs...done. |
| 46 ustacks is done. | 46 ustacks is done. |
| 47 ustacks parameters selected: | 47 ustacks parameters selected: |
| 48 Input file: 'stacks_inputs/PopA_02.1.fq' | 48 Input file: 'stacks_inputs/PopA_02.1.fastq' |
| 49 Sample ID: 2 | 49 Sample ID: 2 |
| 50 Min depth of coverage to create a stack (m): 3 | 50 Min depth of coverage to create a stack (m): 3 |
| 51 Repeat removal algorithm: enabled | 51 Repeat removal algorithm: enabled |
| 52 Max distance allowed between stacks (M): 2 | 52 Max distance allowed between stacks (M): 2 |
| 53 Max distance allowed to align secondary reads: 4 | 53 Max distance allowed to align secondary reads: 4 |