Mercurial > repos > matthias > stacks2_refmap
comparison test-data/cstacks/cstacks.log @ 5:466cc910d640 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty
| author | matthias |
|---|---|
| date | Wed, 27 Feb 2019 09:48:50 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 4:e1dbdd7175c8 | 5:466cc910d640 |
|---|---|
| 1 cstacks parameters selected: | |
| 2 Loci matched based on sequence identity. | |
| 3 Number of mismatches allowed between stacks: 1 | |
| 4 Gapped alignments: enabled | |
| 5 Constructing catalog from 2 samples. | |
| 6 | |
| 7 Initializing new catalog... | |
| 8 Parsing stacks_inputs/PopA_01.tags.tsv | |
| 9 Parsing stacks_inputs/PopA_01.snps.tsv | |
| 10 Parsing stacks_inputs/PopA_01.alleles.tsv | |
| 11 3 loci were newly added to the catalog. | |
| 12 | |
| 13 Processing sample stacks_inputs/PopA_02 [2 of 2] | |
| 14 Parsing stacks_inputs/PopA_02.tags.tsv | |
| 15 Parsing stacks_inputs/PopA_02.snps.tsv | |
| 16 Parsing stacks_inputs/PopA_02.alleles.tsv | |
| 17 Searching for sequence matches... | |
| 18 3 loci in the catalog, 184 kmers in the catalog hash. | |
| 19 Searching for gapped alignments... | |
| 20 Merging matches into catalog... | |
| 21 3 loci were matched to a catalog locus. | |
| 22 0 loci were matched to a catalog locus using gapped alignments. | |
| 23 0 loci were newly added to the catalog. | |
| 24 0 loci matched more than one catalog locus, linking them. | |
| 25 0 linked catalog loci were merged into 0 loci. | |
| 26 | |
| 27 Writing catalog in directory 'stacks_inputs/'. | |
| 28 Final catalog contains 3 loci. | |
| 29 cstacks is done. |