Mercurial > repos > matthias > samtools_split

annotate samtools_phase/test-data/samtools_phase_out_3_log.txt @ 0:6c9caf40b95e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
author matthias
date Fri, 22 Feb 2019 15:42:15 -0500
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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1 CC
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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2 CC Descriptions:
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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3 CC
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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4 CC CC comments
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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5 CC PS start of a phase set
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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6 CC FL filtered region
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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7 CC M[012] markers; 0 for singletons, 1 for phased and 2 for filtered
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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8 CC EV supporting reads; SAM format
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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9 CC // end of a phase set
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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10 CC
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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11 CC Formats of PS, FL and M[012] lines (1-based coordinates):
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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12 CC
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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13 CC PS chr phaseSetStart phaseSetEnd
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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14 CC FL chr filterStart filterEnd
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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15 CC M? chr PS pos allele0 allele1 hetIndex #supports0 #errors0 #supp1 #err1
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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16 CC
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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17 CC
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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18 PS chrI 1412 1542
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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19 M1 chrI 1412 1412 T C 1 7 0 9 0
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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20 M1 chrI 1412 1414 G A 2 7 0 9 0
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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21 M1 chrI 1412 1421 G A 3 7 0 9 0
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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22 M1 chrI 1412 1471 T C 4 5 0 6 0
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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23 M1 chrI 1412 1542 C T 5 3 0 2 0
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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24 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1366
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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25 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1343
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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26 EV 0 chrI 1 40 4M * 0 0 TGGT * YP:i:0 YF:i:0 YI:i:4 YO:i:0 YS:i:1409
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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27 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1353
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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28 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1358
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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29 EV 0 chrI 1 40 4M * 0 0 CAAC * YP:i:1 YF:i:0 YI:i:4 YO:i:0 YS:i:1374
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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30 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1350
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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31 EV 0 chrI 1 40 4M * 0 0 CAAC * YP:i:1 YF:i:0 YI:i:4 YO:i:0 YS:i:1379
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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32 EV 0 chrI 1 40 4M * 0 0 CAAC * YP:i:1 YF:i:0 YI:i:4 YO:i:0 YS:i:1389
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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33 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1341
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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34 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1340
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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35 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1359
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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36 EV 0 chrI 1 40 4M * 0 0 CAAC * YP:i:1 YF:i:0 YI:i:4 YO:i:0 YS:i:1392
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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37 EV 0 chrI 1 40 4M * 0 0 TGGT * YP:i:0 YF:i:0 YI:i:4 YO:i:0 YS:i:1407
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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38 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1346
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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39 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1348
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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40 EV 0 chrI 4 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:1444
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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41 EV 0 chrI 4 40 2M * 0 0 CT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:1462
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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42 EV 0 chrI 4 40 2M * 0 0 CT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:1457
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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43 EV 0 chrI 4 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:1468
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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44 EV 0 chrI 4 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:1461
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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45 //
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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46 PS chrI 3611 3731
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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47 M1 chrI 3611 3611 T A 6 5 0 4 0
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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48 M1 chrI 3611 3659 C T 7 9 0 6 0
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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49 M1 chrI 3611 3731 T A 8 4 0 1 1
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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50 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3569
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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51 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3569
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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52 EV 0 chrI 6 40 2M * 0 0 AT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3576
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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53 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3571
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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54 EV 0 chrI 6 40 2M * 0 0 AT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3568
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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55 EV 0 chrI 6 40 2M * 0 0 AT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3578
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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56 EV 0 chrI 6 40 2M * 0 0 AT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3590
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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57 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3559
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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58 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3609
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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59 EV 0 chrI 7 40 2M * 0 0 TA * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3644
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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60 EV 0 chrI 7 40 2M * 0 0 CT * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3651
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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61 EV 0 chrI 7 40 2M * 0 0 CT * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3637
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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62 EV 0 chrI 7 40 2M * 0 0 CT * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3647
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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63 EV 0 chrI 7 40 2M * 0 0 TT * YP:i:1 YF:i:0 YI:i:1 YO:i:1 YS:i:3657
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
matthias
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64 EV 0 chrI 7 40 2M * 0 0 CT * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3644
6c9caf40b95e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
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65 //