Mercurial > repos > matthias > samtools_depth
diff samtools_flagstat/test-data/samtools_flagstat_out1.txt @ 0:fe46361a85db draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
| author | matthias |
|---|---|
| date | Fri, 22 Feb 2019 16:06:58 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/samtools_flagstat/test-data/samtools_flagstat_out1.txt Fri Feb 22 16:06:58 2019 -0500 @@ -0,0 +1,13 @@ +200 + 0 in total (QC-passed reads + QC-failed reads) +0 + 0 secondary +0 + 0 supplementary +0 + 0 duplicates +25 + 0 mapped (12.50% : N/A) +200 + 0 paired in sequencing +100 + 0 read1 +100 + 0 read2 +0 + 0 properly paired (0.00% : N/A) +0 + 0 with itself and mate mapped +25 + 0 singletons (12.50% : N/A) +0 + 0 with mate mapped to a different chr +0 + 0 with mate mapped to a different chr (mapQ>=5)