Mercurial > repos > matthias > data_manager_dada2

changeset 1:1c50cfb0c0ab draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 42eb67646e47bef13eed672ff6b9d06b1d82ae3d-dirty
author matthias
date Thu, 07 Mar 2019 11:48:18 -0500
parents 419037fe1150
children b4c303665291
files data_manager/.dada2_fetcher.xml.swp data_manager/.dada_fetcher.xml.swp data_manager/.data_manager.py.swp data_manager/dada2_fetcher.xml data_manager/dada_fetcher.xml data_manager_conf.xml
diffstat 6 files changed, 40 insertions(+), 40 deletions(-) [+]
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Binary file data_manager/.dada2_fetcher.xml.swp has changed
Binary file data_manager/.dada_fetcher.xml.swp has changed
Binary file data_manager/.data_manager.py.swp has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/dada2_fetcher.xml	Thu Mar 07 11:48:18 2019 -0500
@@ -0,0 +1,39 @@
+<?xml version="1.0"?>
+<tool id="dada_fetcher" name="dada2 dada manager" tool_type="manage_data" version="0.0.2">
+    <description>Download reference data sets</description>
+    <command detect_errors="exit_code">
+    <![CDATA[
+    python '$__tool_directory__/data_manager.py' 
+    --out '${out_file}'
+    --file '$type_cond.database_name'
+    ]]>
+    </command>
+    <inputs>
+        <param name="database_name" type="select" label="mapping data">
+            <option value="silva132">Silva version 132</option>
+            <option value="silva128">Silva version 128</option>
+            <option value="rdp16">RDP trainset 16 + RDP database release 11.5</option>
+            <option value="rdp14">RDP trainset 14</option>
+            <option value="gg13.84">GreenGenes version 13.8</option>
+<!--            <option value="unite8.0">UNITE: General Fasta release 8.0 </option>
+            <option value="RefSeq_RDP">NCBI RefSeq 16S rRNA database supplemented by RDP</option>
+            <option value="gtdb">GTDB: Genome Taxonomy Database (More info: http://gtdb.ecogenomic.org/)</option>
+            <option value="hitdb1">HitDB version 1 (Human InTestinal 16S rRNA)</option>
+            <option value="silva132_euk">Silva Eukaryotic 18S, v132 &amp; v128</option>
+            <option value="PR2v4.11.0">Protist Ribosomal Reference database 2 version 4.11.0</option>-->
+        </param>
+    </inputs>
+    <outputs>
+        <data name="out_file" format="data_manager_json" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="database_name" value="silva132"/>
+            <output name="out_file" file="silva132_json"/>
+        </test>
+    </tests>
+    <help>
+http://www.arb-silva.de/silva-license-information
+    </help>
+</tool>
+
--- a/data_manager/dada_fetcher.xml	Thu Mar 07 09:33:43 2019 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,39 +0,0 @@
-<?xml version="1.0"?>
-<tool id="dada_fetcher" name="dada2 dada manager" tool_type="manage_data" version="0.0.1">
-    <description>Download reference data sets</description>
-    <command detect_errors="exit_code">
-    <![CDATA[
-    python '$__tool_directory__/data_manager.py' 
-    --out '${out_file}'
-    --file '$type_cond.database_name'
-    ]]>
-    </command>
-    <inputs>
-        <param name="database_name" type="select" label="mapping data">
-            <option value="silva132">Silva version 132</option>
-            <option value="silva128">Silva version 128</option>
-            <option value="rdp16">RDP trainset 16 + RDP database release 11.5</option>
-            <option value="rdp14">RDP trainset 14</option>
-            <option value="gg13.84">GreenGenes version 13.8</option>
-<!--            <option value="unite8.0">UNITE: General Fasta release 8.0 </option>
-            <option value="RefSeq_RDP">NCBI RefSeq 16S rRNA database supplemented by RDP</option>
-            <option value="gtdb">GTDB: Genome Taxonomy Database (More info: http://gtdb.ecogenomic.org/)</option>
-            <option value="hitdb1">HitDB version 1 (Human InTestinal 16S rRNA)</option>
-            <option value="silva132_euk">Silva Eukaryotic 18S, v132 &amp; v128</option>
-            <option value="PR2v4.11.0">Protist Ribosomal Reference database 2 version 4.11.0</option>-->
-        </param>
-    </inputs>
-    <outputs>
-        <data name="out_file" format="data_manager_json" />
-    </outputs>
-    <tests>
-        <test>
-            <param name="database_name" value="silva132"/>
-            <output name="out_file" file="silva132_json"/>
-        </test>
-    </tests>
-    <help>
-http://www.arb-silva.de/silva-license-information
-    </help>
-</tool>
-
--- a/data_manager_conf.xml	Thu Mar 07 09:33:43 2019 -0500
+++ b/data_manager_conf.xml	Thu Mar 07 11:48:18 2019 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <data_managers>
-    <data_manager tool_file="data_manager/dada2_fetcher.xml" id="dada2_fetcher" version="0.0.1">
+    <data_manager tool_file="data_manager/dada2_fetcher.xml" id="dada2_fetcher">
         <data_table name="dada2_taxonomy">
             <output>
                 <column name="value" />