Mercurial > repos > matthias > dada2_learnerrors

annotate Galaxy-Workflow-dada2_for_paired_data.ga @ 3:10141f4eaae9 draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
author matthias
date Mon, 29 Apr 2019 08:56:03 -0400
parents
children
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3
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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1 {
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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2 "a_galaxy_workflow": "true",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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3 "annotation": "",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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4 "format-version": "0.1",
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matthias
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5 "name": "dada2 for paired data",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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6 "steps": {
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7 "0": {
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matthias
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8 "annotation": "",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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9 "content_id": null,
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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10 "errors": null,
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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11 "id": 0,
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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12 "input_connections": {},
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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13 "inputs": [
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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14 {
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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15 "description": "",
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16 "name": "Input Dataset Collection"
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17 }
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18 ],
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matthias
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19 "label": null,
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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20 "name": "Input dataset collection",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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21 "outputs": [],
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22 "position": {
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23 "left": 100,
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24 "top": 591
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25 },
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26 "tool_id": null,
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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27 "tool_state": "{\"collection_type\": \"list:paired\", \"name\": \"Input Dataset Collection\"}",
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28 "tool_version": null,
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matthias
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29 "type": "data_collection_input",
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matthias
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30 "uuid": "b1f16224-49d2-4b7a-a37d-3d93c54f679f",
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31 "workflow_outputs": []
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32 },
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33 "1": {
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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34 "annotation": "",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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35 "content_id": "dada2_plotQualityProfile",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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36 "errors": null,
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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37 "id": 1,
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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38 "input_connections": {
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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39 "paired_cond|reads": {
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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40 "id": 0,
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41 "output_name": "output"
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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42 }
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43 },
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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44 "inputs": [],
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45 "label": null,
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46 "name": "dada2: plotQualityProfile",
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47 "outputs": [
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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48 {
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49 "name": "output",
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50 "type": "pdf"
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51 }
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52 ],
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53 "position": {
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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54 "left": 406,
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55 "top": 473
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56 },
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57 "post_job_actions": {},
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58 "tool_id": "dada2_plotQualityProfile",
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59 "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"paired_cond\": \"{\\\"__current_case__\\\": 0, \\\"paired_select\\\": \\\"paired\\\", \\\"reads\\\": {\\\"__class__\\\": \\\"ConnectedValue\\\"}}\", \"n\": \"\\\"500000\\\"\", \"aggregate\": \"\\\"true\\\"\", \"chromInfo\": \"\\\"/home/berntm/projects/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\"}",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
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60 "tool_version": "1.10.0+galaxy0",
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61 "type": "tool",
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62 "uuid": "f6e0a2ea-a639-48d9-ae3c-c1ec2bab93e5",
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63 "workflow_outputs": []
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64 },
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65 "2": {
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66 "annotation": "",
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67 "content_id": "dada2_filterAndTrim",
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68 "errors": null,
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69 "id": 2,
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70 "input_connections": {
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71 "paired_cond|reads": {
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72 "id": 0,
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73 "output_name": "output"
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74 }
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75 },
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76 "inputs": [],
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77 "label": null,
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78 "name": "dada2: filterAndTrim",
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79 "outputs": [
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80 {
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81 "name": "paired_output",
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243 "reads": {
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319 "errorrates": {
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matthias
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394 "input_connections": {
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395 "samples": {
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397 "output_name": "merged"
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matthias
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398 }
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399 },
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402 "name": "dada2: makeSequenceTable",
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403 "outputs": [
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matthias
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404 {
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405 "name": "stable",
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406 "type": "dada2_sequencetable"
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matthias
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513 "type": "tool",
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516 },
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517 "14": {
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518 "annotation": "",
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519 "content_id": "dada2_assignTaxonomyAddspecies",
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522 "input_connections": {
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523 "seqs": {
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matthias
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525 "output_name": "stable_sequencetable"
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matthias
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526 }
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527 },
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528 "inputs": [],
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530 "name": "dada2: assignTaxonomy and addSpecies",
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matthias
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532 {
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533 "name": "output",
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534 "type": "tabular"
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matthias
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537 "position": {
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matthias
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540 },
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matthias
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541 "post_job_actions": {},
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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542 "tool_id": "dada2_assignTaxonomyAddspecies",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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matthias
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544 "tool_version": "1.10.0+galaxy0",
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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545 "type": "tool",
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matthias
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546 "uuid": "babc7594-ae73-4818-919f-561836c45c17",
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matthias
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diff changeset
547 "workflow_outputs": []
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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548 }
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matthias
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549 },
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matthias
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550 "tags": [],
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matthias
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551 "uuid": "48912525-da2b-44b4-b225-f3e3adecad96",
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matthias
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552 "version": 1
10141f4eaae9 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit 5b1603bbcd3f139cad5c876be83fcb39697b5613-dirty
matthias
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diff changeset
553 }