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view sra_fetch.xml @ 40:f1b83804013f draft

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add option to take plaintext file with accession on one line
author Matt Shirley <mdshw5@gmail.com>
date Mon, 05 Aug 2013 09:40:26 -0400
parents 4da2d7f0128e
children
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<tool id="sra_fetch" name="Fetch SRA archive" version="1.0.3">
  <description> by accession from NCBI SRA.</description>
  <command interpreter="python">sra_fetch.py --accession '$accession' --out '$output'</command>
  <inputs>
    <param name="accession" size="13" type="text" value="SRR000001" label="sra run accession"/>
  </inputs>
  <outputs>
    <data format="sra" name="output" label="${accession.value}"/>
  </outputs>
  <help>
    This tool fetches sra archives by accession from NCBI over FTP.
  </help>
</tool>