diff sra_fetch.xml @ 13:45031bbf6b27 draft

better sra_fetch code, compliant (?) datatype, updated dependencies in tool wrappers
author Matt Shirley <mdshw5@gmail.com>
date Mon, 17 Jun 2013 16:17:33 -0400
parents ffdd41766195
children 078b8e168b0c
line wrap: on
line diff
--- a/sra_fetch.xml	Mon Jun 17 16:05:30 2013 -0400
+++ b/sra_fetch.xml	Mon Jun 17 16:17:33 2013 -0400
@@ -1,6 +1,6 @@
-<tool id="sra_fetch" name="Fetch SRA" version="1.0.0">
+<tool id="sra_fetch" name="Fetch SRA" version="1.0.1">
   <description> by accession from NCBI SRA.</description>
-  <command interpreter="python">sra_fetch.py '$accession' '$output'</command>
+  <command interpreter="python">sra_fetch.py '$accession' -o '$output'</command>
   <inputs>
     <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/>
   </inputs>