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comparison sra_fetch.xml @ 13:45031bbf6b27 draft

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better sra_fetch code, compliant (?) datatype, updated dependencies in tool wrappers
author Matt Shirley <mdshw5@gmail.com>
date Mon, 17 Jun 2013 16:17:33 -0400
parents ffdd41766195
children 078b8e168b0c
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12:b77840618b8f 13:45031bbf6b27
1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> 1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.1">
2 <description> by accession from NCBI SRA.</description> 2 <description> by accession from NCBI SRA.</description>
3 <command interpreter="python">sra_fetch.py '$accession' '$output'</command> 3 <command interpreter="python">sra_fetch.py '$accession' -o '$output'</command>
4 <inputs> 4 <inputs>
5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> 5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/>
6 </inputs> 6 </inputs>
7 <outputs> 7 <outputs>
8 <data format="sra" name="output" label="Fetch ${accession.value}"/> 8 <data format="sra" name="output" label="Fetch ${accession.value}"/>