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comparison tool_dependencies.xml @ 32:a7d8d22f9ad2 draft

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debug prefetch caching and accession input for fastq_dump
author Matt Shirley <mdshw5@gmail.com>
date Sun, 30 Jun 2013 11:27:51 -0400
parents 98f3e4be6d72
children 7803126704c6
comparison
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31:85e47f636e10 32:a7d8d22f9ad2
6 <action type="download_by_url">http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.2-4/sra_sdk-2.3.2-4.tar.gz</action> 6 <action type="download_by_url">http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.3.2-4/sra_sdk-2.3.2-4.tar.gz</action>
7 <action type="shell_command">make release</action> 7 <action type="shell_command">make release</action>
8 <action type="shell_command">make static</action> 8 <action type="shell_command">make static</action>
9 <action type="shell_command">make</action> 9 <action type="shell_command">make</action>
10 <action type="make_directory">$INSTALL_DIR/bin</action> 10 <action type="make_directory">$INSTALL_DIR/bin</action>
11 <action type="make_directory">$INSTALL_DIR/ncbi</action>
12 <action type="make_directory">$INSTALL_DIR/ncbi/public</action>
11 <action type="shell_command">sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" bin64/ncbi/default.kfg</action> 13 <action type="shell_command">sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" bin64/ncbi/default.kfg</action>
12 <action type="shell_command">cp --recursive --dereference bin64/* $INSTALL_DIR/bin</action> 14 <action type="shell_command">cp --recursive --dereference bin64/* $INSTALL_DIR/bin</action>
13 <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action> 15 <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action>
14 </actions> 16 </actions>
15 </install> 17 </install>