Mercurial > repos > matt-shirley > hamstring
changeset 8:61f9e983ece4 draft default tip
Increment version
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Sun, 31 Mar 2013 11:32:11 -0400 |
| parents | 4c66fade2391 |
| children | |
| files | fixFastq.xml tool_dependencies.xml |
| diffstat | 2 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/fixFastq.xml Sun Mar 31 10:50:39 2013 -0400 +++ b/fixFastq.xml Sun Mar 31 11:32:11 2013 -0400 @@ -2,10 +2,11 @@ <description> generated using Hamming encoding</description> <command interpreter="python">fixFastq.py $strict $list $fastq $out</command> <inputs> - <param format="text" name="strict" type="select" value=""/> + <param format="text" name="strict" type="select" value=""> <label>Replace unknown barcodes with N</label> <option value="">No</option> <option value="-s">Yes</option> + </param> <param format="tabular" name="list" type="data" label="List of barcodes used"/> <param format="fastqsanger" name="fastq" type="data" label="Barcoded reads"/> </inputs> @@ -16,7 +17,7 @@ <exit_code range="127" level="fatal" description="Cannot find fixFastq.py"/> </stdio> <requirements> - <requirement type="package" version="1.0">hamstring</requirement> + <requirement type="package" version="1.01">hamstring</requirement> </requirements> <help> This program accepts a fastqsanger file containing reads that are barcoded on the 5' end using a Hamming7,4 DNA barcode. A list of valid barcodes is checked,
--- a/tool_dependencies.xml Sun Mar 31 10:50:39 2013 -0400 +++ b/tool_dependencies.xml Sun Mar 31 11:32:11 2013 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> - <package name="hamstring" version="1.0"> - <install version="1.0"> + <package name="hamstring" version="1.01"> + <install version="1.01"> <actions> <action type="shell_command">git clone git://github.com/mdshw5/hamstring.git</action> <action type="shell_command">mv fixFastq.py $INSTALL_DIR</action>